コア研究員の執筆リストです。
別刷りはメール等にてお問い合わせください。


[33] *単著論文 [Preprint]
Identification of active transposable element candidates from ROH in a de novo assembled chromosome-scale genome of a Nishikigoi, an ornamental fish derived from Common carp (Cyprinus carpio)
Aoi Hosaka
2023/12/26
bioRxiv
DOI: 10.1101/2023.12.26.573356


[32] *単著論文
ICH Q5A 改定(R2)/NGS を中心とした浮遊細胞培養の品質管理
緒方 法親
PHARMASTAGE, 2023, 8月号
https://www.gijutu.co.jp/doc/magazine/p_2023_08.htm


[31] *責任著者論文 *第1著者論文
In vivo-like Culture of Monophagous Animal Organ using Dietary Components
Norichika Ogata, Shogo Konishi, Takeshi Yokoyama
J Biotechnol Biomed. 2023;6(1):42-48. doi: 10.26502/jbb.2642-91280070
PMID: 36874218


[30] *単著論文
The Growing Liberality Observed in Primary Animal and Plant Cultures is Common to the Social Amoeba
Norichika Ogata
Journal of Bioinformatics and Systems Biology, 2023 Feb 3, 6: 10-17
PMCID: PMC10078981
>*単著論文 [Preprint]
>The Growing Liberality Observed in Primary Animal and Plant Cultures is Common to the Social Amoeba
>Norichika Ogata
>2023/01/06
>arXiv
>https://doi.org/10.48550/arXiv.2301.02433



[29] [書籍][日本語][分担執筆]
バイオ医薬品の製剤安定化/高品質化のための不純物の規格設定と評価・管理手法
緒方法親松田朋子、鬼塚正義
サイエンス&テクノロジー
2022/10/26
ISBN: 978-4-86428-291-8


[28] *責任著者論文 *第1著者論文
Cellular liberality is measurable as Lempel-Ziv complexity of fastq files
Norichika Ogata, Aoi Hosaka
Proceedings IEEE 22nd International Conference on Bioinformatics and Bioengineering, 7-9 Nobember 2022
IEEE Catalog Number:CFP22266-ART
ISBN: 978-1-6654-8487-9
https://doi.org/10.1109/BIBE55377.2022.00072
>2022/08/17
>arXiv
>https://doi.org/10.48550/arXiv.2208.07369



[27] *第1著者論文
A de novo genome assembly of Solanum verrucosum Schlechtendal, a Mexican diploid species geographically isolated from other diploid A-genome species of potato relatives
Awie J Hosaka (Aoi Hosaka), Rena Sanetomo, Kazuyoshi Hosaka
2022/06/01
G3 Genes|Genomes|Genetics
https://doi.org/10.1093/g3journal/jkac166


[26] *単著論文
Whole-Genome Sequence of the Trypoxylus dichotomus Japanese rhinoceros beetle
Norichika Ogata
2021/10/11
microPublication Biology.
https://doi.org/10.17912/micropub.biology.000487
>*単著論文 [Preprint]
>Whole-Genome Sequence of the Trypoxylus dichotomus Japanese rhinoceros beetle
>Norichika Ogata
>2020/11/19
>arXiv
>https://arxiv.org/abs/2011.08845



[25] *単著論文
Importance of experimental information (metadata) for archived sequence data: case of specific gene bias due to lag time between sample harvest and RNA protection in RNA sequencing
Tomoko Matsuda
2021/08/25
PeerJ
https://doi.org/10.7717/peerj.11875


[24] *責任著者論文 *第1著者論文
Single-cell transcriptome analyses reveal heterogeneity in suspension cultures and clonal markers of CHO-K1 cells
Norichika Ogata, Akio Nishimura, Tomoko Matsuda, Michi Kubota, Takeshi Omasa
Biotechnol Bioeng. 2020 Nov 12. doi: 10.1002/bit.27624.
PMID: 33179258
>*責任著者論文 *第1著者論文 [Preprint]
>Single-cell transcriptome analyses reveal heterogeneity in suspension cultures and clonal markers of CHO-K1 cells
>Ogata N, Nishimura A, Matsuda T, Kubota M, Omasa T.
>2020/07/16
>authorea
>doi: 10.22541/au.159493149.94546834



[23] *責任著者論文 *第1著者論文
*最高論文賞受賞
International Conference on Intelligent Computing 2017, Liverpool, UK
Calculating Kolmogorov Complexity from the Transcriptome Data.
Panpaki Seekaki, Norichika Ogata
Intelligent Computing Theories and Application - 13th International Conference, ICIC 2017, Liverpool, UK, August 7-10, 2017, Proceedings, Part II p.529-540
DOI:10.1007/978-3-319-63312-1_46
>*責任著者論文 *第1著者論文 [Preprint]
>Calculating Kolmogorov Complexity from the Transcriptome Data
>Panpaki Seekaki, Norichika Ogata
>2017/04/11
>arXiv, http://arxiv.org/abs/arXiv:1704.03559



[22] *責任著者論文 *第1著者論文
An Electrical Impedance Biosensor Array for Tracking Moving Cells
Norichika Ogata, Akihisa Shina, Takayuki Komiya, Yoji Iizuka, Ken Matsuse, Fuminobu Imaizumi, Tomoyuki Suwa, Akinobu Teramoto
2018 IEEE SENSORS
DOI:10.1109/icsens.2018.8589577


[21] *責任著者論文 *第1著者論文 [Preprint]
Phylogenetic analyses of the severe acute respiratory syndrome coronavirus 2 reflected the several routes of introduction to Taiwan, the United States, and Japan
Tomoko Matsuda, Hikoyu Suzuki, Norichika Ogata
2020/02/28
arXiv
https://doi.org/10.48550/arXiv.2002.08802


[20] *インタビュー記事 [日本語]
挑戦する人―サイエンスと歩む私の奮闘記: 「人はなぜ生きるのか」生命の本質にデータで迫る!
緒方 法親
実験医学 2020年10月号 Vol.38 No.16
2020
ISBN 978-4-7581-2536-9


[19]
Characterization of Chinese hamster ovary cells with disparate chromosome numbers: Reduction of the amount of mRNA relative to total protein.
Yamano-Adachi N, Ogata N, Tanaka S, Onitsuka M, Omasa T.
J Biosci Bioeng. 2020 Jan;129(1):121-128. doi: 10.1016/j.jbiosc.2019.06.012. Epub 2019 Jul 11.
PMID: 31303495


[18]
Morphological identification of Amphitetranychus species (Acari: Tetranychidae) with crossbreeding, esterase zymograms and DNA barcode data.
Arabuli T, Negm MW, Matsuda T, Kitashima Y, Abramishvili T, Akimov IA, Zhovnerchuk OV, Popov SY, Gotoh T.
PLoS One. 2019 Sep 13;14(9):e0221951. doi: 10.1371/journal.pone.0221951. eCollection 2019.
PMID: 31518372 Free PMC article.


[17] *責任著者論文
Synergic Interaction between Permethrin and Bt toxins discovered using RNA-seq
Takuma Sakamoto, Toshinori Kozaki, Norichika Ogata
2022/09/12
Journal of Clinical Toxicology
doi: 10.35248/2161-0495-22.12.519.
>*責任著者論文 [Preprint]
>Synergic Interaction between Permethrin and Bt toxins discovered using RNA-seq
>Takuma Sakamoto, Toshinori Kozaki, Norichika Ogata
>2019/06/27
>bioRxiv
DOI:10.1101/684803



[16]
Effects of Wolbachia/Cardinium Infection on the Mitochondrial Phylogeny of Oligonychus castaneae (Acari: Tetranychidae).
Sakamoto H, Suzuki R, Nishizawa N, Matsuda T, Gotoh T.
J Econ Entomol. 2019 Mar 21;112(2):883-893. doi: 10.1093/jee/toy354.
PMID: 30496431


[15] [書籍][日本語][分担執筆]
理系のためのベンチャービジネス実践論
千葉大学ベンチャービジネスラボラトリー
緒方法親
丸善出版
2019/03
ISBN: 9784621303788


[14] *単著論文
Transcriptome Dedifferentiation Observed in Animal Primary Cultures is Essential to Plant Reprogramming
Norichika Ogata
J Bioinform Syst Biol.
2022;5(4):116-118.
PMID: 36397740
doi: 10.26502/jbsb.5107039. Epub 2022 Oct 7.
*単著論文
>Transcriptome Dedifferentiation Observed in Animal Primary Cultures is Essential to Plant Reprogramming
>Norichika Ogata
>2019/02/06
>bioRxiv
>DOI:10.1101/542647


[13] *単著論文 [Preprint]
Quantitative Measurement of Heritability in the Pre-RNA World
Norichika Ogata
2019/01/22
arXiv
http://arxiv.org/abs/arXiv:1901.07400


[12] *第1著者論文
Phylogeny of the spider mite sub-family Tetranychinae (Acari: Tetranychidae) inferred from RNA-Seq data.
Matsuda T, Kozaki T, Ishii K, Gotoh T.
PLoS One. 2018 Sep 7;13(9):e0203136. doi: 10.1371/journal.pone.0203136. eCollection 2018.
PMID: 30192794 Free PMC article.


[11] *単著書籍 [書籍][日本語]
バイオインフォマティクスを用いた研究開発のポイントと実例 〜基礎から実際に解析を進めるための勘所、データ判断基準、バイオインフォマティクス研究管理上での留意点まで〜
緒方 法親
情報機構
2018/08
ISBN: 978-4-86502-156-1


[10]
Evolution of vomeronasal receptor 1 (V1R) genes in the common marmoset (Callithrix jacchus).
Moriya-Ito K, Hayakawa T, Suzuki H, Hagino-Yamagishi K, Nikaido M.
Gene. 2018 Feb 5;642:343-353. doi: 10.1016/j.gene.2017.11.048. Epub 2017 Nov 17.
PMID: 29155331


[9] *第1著者論文
A Single Pheromone Receptor Gene Conserved across 400 My of Vertebrate Evolution.
Suzuki H, Nishida H, Kondo H, Yoda R, Iwata T, Nakayama K, Enomoto T, Wu J, Moriya-Ito K, Miyazaki M, Wakabayashi Y, Kishida T, Okabe M, Suzuki Y, Ito T, Hirota J, Nikaido M.
Mol Biol Evol. 2018 Dec 1;35(12):2928-2939. doi: 10.1093/molbev/msy186.
PMID: 30252081


[8] *責任著者論文
Physiological effects of a novel artificially synthesized antimalarial cyclic peptide: Mahafacyclin B.
Fujita Y, Seekaki P, Ogata N, Chiba K.
PLoS One. 2017 Nov 30;12(11):e0188415. doi: 10.1371/journal.pone.0188415. eCollection 2017.
PMID: 29190661 Free PMC article.


[7] *単著エッセー [日本語]
生物材料インデックス : 研究室の片隅で生き物への愛を語る カブトムシのイデア
緒方 法親
生物工学会誌 95(8) p.498-502
2017
http://ci.nii.ac.jp/naid/40021314576


[6] *責任著者論文 *第1著者論文
Relevant principal factors affecting the reproducibility of insect primary culture.
Ogata N, Iwabuchi K.
In Vitro Cell Dev Biol Anim. 2017 Jun;53(6):532-537. doi: 10.1007/s11626-017-0140-7. Epub 2017 Feb 22.
PMID: 28229336 Free PMC article.


[5]
A long-range cis-regulatory element for class I odorant receptor genes.
Iwata T, Niimura Y, Kobayashi C, Shirakawa D, Suzuki H, Enomoto T, Touhara K, Yoshihara Y, Hirota J.
Nat Commun. 2017 Oct 12;8(1):885. doi: 10.1038/s41467-017-00870-4.
PMID: 29026079 Free PMC article.


[4] *責任著者論文 *第1著者論文 [Preprint]
An Enrichment Method for Obtaining Biologically Significant Genes from Statistically Significant Differentially Expressed Genes in Comparative Transcriptomics
Panpaki Seekaki, Norichika Ogata
2017/05/09
arXiv
http://arxiv.org/abs/arXiv:1705.03201


[3] *責任著者論文 *第1著者論文 [Preprint]
A $4,000 Workstation for Mammalian Genome Assembly with Long Reads
Hikoyu Suzuki, Norichika Ogata
2017/03/20
arXiv
http://arxiv.org/abs/arXiv:1703.10231


[2] *責任著者論文 *第1著者論文
Comparison between the Amount of Environmental Change and the Amount of Transcriptome Change.
Ogata N, Kozaki T, Yokoyama T, Hata T, Iwabuchi K.
PLoS One. 2015 Dec 14;10(12):e0144822. doi: 10.1371/journal.pone.0144822. eCollection 2015.
PMID: 26657512 Free PMC article.
>*責任著者論文 *第1著者論文 [Preprint]
>Comparison between the amount of environmental change and the amount of transcriptome change
>Norichika Ogata, Toshinori Kozaki, Takeshi Yokoyama, Tamako Hata, Kikuo Iwabuchi
>2015/01/07
>arXiv
>https://arxiv.org/abs/1501.01677



[1] *第1著者論文
Transcriptome responses of insect fat body cells to tissue culture environment.
Ogata N, Yokoyama T, Iwabuchi K.
PLoS One. 2012;7(4):e34940. doi: 10.1371/journal.pone.0034940. Epub 2012 Apr 6.
PMID: 22493724 Free PMC article.